For example, if you've killed the heads of the Thieves Guild for the Fighter's Guild questline, you obviously cannot advance in the Thieves Guild without console commands.
Don't forget: Joining certain factions closes you off to other ones, and you cannot advance in certain factions beyond a certain point if you've already done a certain amount in another faction. A quick Google search of any one of them should be able to help you find any notes regarding how you join them. This is a complete list of the joinable factions in Morrowind. Since i want to try and complete every quest for every factions and given how i was rejected from Guilds in previous playthroughs i am wondering what all the Factions are which i can join and any restrictions which may stop me getting in later in the game or any quests that i end up doing which could see me kicked out.